Hi @ExponentCard287
What happens if you temporarily disconnect (i.e. unplug) all your controller devices (such as the Logitech SAITEK PRO throttle quadrant) & change the flap positions just using the mouse to click the flap switch or using the keyboard? If the flaps then operate as expected, it will have al least narrowed the problem down to a problem with one or more of your controller device(s).