I have a honeycomb setup in combination with virtual desktop and a Quest 2 running. Never had any problems though. I think you will have to look into your virtual desktop settings, you probably have some input emulation active. In the input section of virtual desktop (in VR) I have enabled all input options except for “thumbstick horizontal scrolling” and “hand tracking”. The “gamepad” and “emulate d-pad” options are all turned off. Please check if these settings match on your end first.